Barshad G# & Danko CG#. (2025). Revisiting models of enhancer–promoter communication in gene regulation. Genome Research. DOI: 10.1101/gr.278389.123 # Equal corresponding authors
Barshad G, Lewis JJ, Chivu AG, Abuhashem A, Kristenstein N, Rice EJ, Rando OJ, Hadjantonakis AK, Danko CG. (2023). RNA polymerase II dynamics shape enhancer-promoter interactions. Nature Genetics. DOI: https://doi.org/10.1038/s41588-023-01442-7
Alexander AK, Rice EJ, Lujic J, Simon LE, Tanis S, Barshad G, Zho L, Lama J, Cohen PE, Danko CG. (2023). Meiotic gene transcription programs are mediated by A-MYB and BRDT-dependent RNA polymerase II pause release during mammalian prophase I. Nature Communications. DOI: https://doi.org/10.1038/s41467-023-37408-w
Barshad G*, Webb LM*, Ting HA, Oyesola OO, Onyekwere OG, Lewis JJ, Rice EJ, Matheson MK, Sun XH, von Moltke J, Danko CG, and Tait Wojno ED. (2022). E-protein inhibition in ILC2 development shapes the function of mature ILC2s during allergic airway inflammation. Journal of Immunology. DOI: https://doi.org/10.4049/jimmunol.2100414 * Equal contribution
Zhao Y, Dukler N, Barshad G, Toneyan S, Danko CG, Siepel A. (2021). Deconvolution of Expression for Nascent RNA sequencing data (DENR) highlights pre-RNA isoform diversity in human cells. DOI: https://doi.org/10.1093/bioinformatics/btab582
Choate LA, Barshad G, McMahon PW, Said I, Rice EJ, Munn PR, Lewis JJ, Danko CG. (2021) Multiple stages of evolutionary change in anthrax toxin receptor expression in humans. Nature Communications. DOI: https://www.nature.com/articles/s41467-021-26854-z
Barshad G, Zlotnikov-Poznianski N, Gal L, Schuldiner M, Mishmar D. (2019). Disease-causing mutations in subunits of OXPHOS complex I affect certain physical interactions. Scientific Reports. DOI: 1038/s41598-019-46446-8.
Barshad G, Blumberg A, Cohen T, Mishmar D. (2018). Human primitive brain displays negative mitochondrial-nuclear expression correlation of respiratory genes. Genome Research. DOI: http://www.genome.org/cgi/doi/10.1101/gr.226324.117.
Barshad G, Marom S, Cohen T, Mishmar D. (2018). Mitochondrial DNA transcription and regulation: an evolutionary perspective. Trends in Genetics, 34(9), 682-692. DOI: https://doi.org/10.1016/j.tig.2018.05.009
Blumberg A, Barshad G, Mishmar D. (2016). "Mitochondrial and Nuclear Genome Coevolution". In: Kliman, R.M. (ed.), Encyclopedia of Evolutionary Biology, 3: 19–26. Oxford: Academic Press. DOI: https://doi.org/10.1016/B978-0-12-800049-6.00193-1
Bar-Yaacov D, Hadjivasiliou Z, Levin L, Barshad G, Zarivach R, Bouskila A, Mishmar D. (2015). Mitochondrial Involvement in Vertebrate Speciation? The Case of Mito-nuclear Genetic Divergence in Chameleons. Genome Biology & Evolution. DOI: https://doi.org/10.1093/gbe/evv226
